| Date | Gap | Set | Pos. | Before | After |
|---|---|---|---|---|---|
| 1/2/03 | 1206 | 2 | 5/7 | Limb By Limb | Run Like an Antelope |
| 2/18/03 | 6 | 2 | 3/7 | Limb By Limb | Divided Sky |
| 2/25/03 | 5 | 2 | 5/7 | Runaway Jim | Sparkle |
| 7/23/03 | 16 | 2 | 6/7 | Run Like an Antelope | Slave to the Traffic Light |
| 7/29/03 | 4 | 2 | 2/10 | Crosseyed and Painless | Brother |
| 12/1/03 | 7 | 1 | 4/7 | Guyute | Sparkle |
| 9/3/22 | 543 | 2 | 4/8 | Sigma Oasis | The Moma Dance |
Thunderhead has not been played in the last 91 shows.